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;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2020 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.

(define-module (gnu services science)
  #:export (<rshiny-configuration>
            rshiny-configuration
            rshiny-configuration?
            rshiny-configuration-package
            rshiny-configuration-binary
            rshiny-shepherd-service
            rshiny-service-type))

(use-modules (gnu)
             (guix records)
             (ice-9 match))
(use-service-modules shepherd)
(use-package-modules cran)

(define-record-type* <rshiny-configuration>
  rshiny-configuration
  make-rshiny-configuration
  rshiny-configuration?
  (package          rshiny-configuration-package    ; file-like
                    (default r-shiny))
  (binary           rshiny-configuration-binary     ; string
                    (default "rshiny")))

(define rshiny-shepherd-service
  (match-lambda
    (($ <rshiny-configuration> package binary)
     (list
       (shepherd-service
         (documentation (string-append "R-Shiny service for " binary))
         (provision (list (symbol-append 'rshiny- (string->symbol
                                                    (string-take binary 9)))))
         (requirement '(networking))
         (start
           #~(exec-command
               (list
                 #$(string-append "/run/current-system/profile/bin/" binary))
               ;#:log-file #$(string-append "/var/log/" binary ".log") ; kills shepherd
               #:environment-variables
               (list "R_LIBS_USER=/run/current-system/profile/site-library/")))
         (stop #~(make-kill-destructor)))))))

(define rshiny-service-type
  (service-type
    (name 'rshiny)
    (extensions
      (list
        (service-extension shepherd-root-service-type
                           rshiny-shepherd-service)
        (service-extension profile-service-type
                           ;; We want the package installed so that it
                           ;; pulls in the propagated inputs as well.
                           (lambda (config)
                             (list
                               (rshiny-configuration-package config))))))
    (description
     "Run an R-Shiny webapp as a Guix Service.")))
--localstatedir=/var instead of --localstatedir=@var{directory}. Ludovic Courtès 2022-01-31doc: Add a rule of thumb to guide enabling new committers....* doc/contributing.texi (Commit Access): Introduce a new rule of thumb to determine if a contributor should be considered to become a committer. Maxim Cournoyer 2022-01-28doc: Mention how to remedy "source file ... newer than compiled error"....* doc/contributing.texi (Running Guix Before It Is Installed): Mention how to remedy "source file ... newer than compiled" error by running `make -j`. Co-authored-by: jgart <jgart@dismail.de> Co-authored-by: Julien Lepiller <julien@lepiller.eu> Co-authored-by: Ryan Prior <rprior@protonmail.com> Co-authored-by: Blake Shaw <blake@nonconstructivism.com> Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Guix Together 2022-01-28doc: Explain the use of make clean-go when an ABI mismatch occurs....* doc/contributing.texi (Building from Git): Adds section on using make clean-go. Co-authored-by: jgart <jgart@dismail.de> Co-authored-by: Julien Lepiller <julien@lepiller.eu> Co-authored-by: Ryan Prior <rprior@protonmail.com> Co-authored-by: Blake Shaw <blake@nonconstructivism.com> Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Guix Together 2022-01-10style: Add '--styling' option....* guix/scripts/style.scm (format-package-definition): New procedure. (%options, show-help): Add "--styling". (%default-options): Add 'styling-procedure'. (guix-style): Honor it. * tests/style.scm (with-test-package) ("input labels, 'safe' policy") ("input labels, 'safe' policy, nothing changed") ("input labels, margin comment") ("input labels, margin comment on long list") ("input labels, line comment") ("input labels, modify-inputs and margin comment"): Pass "-S inputs". * etc/indent-code.el: Remove. * doc/contributing.texi (Formatting Code): Mention "guix style" instead of "etc/indent-code.el". (Submitting Patches): Add item for "guix style". * doc/guix.texi (Invoking guix style): Document "-S" and update. Ludovic Courtès 2021-12-20doc: Remove extra closing paren....* doc/contributing.texi (Emacs Packages): Remove extra paren in example. Ludovic Courtès 2021-12-02doc: Give more details about generating patches with base commit information....* doc/contributing.texi (Submitting Patches): Talk more about '--base'. Leo Famulari 2021-11-17doc: Improve wording for param spec of `./configure`....* doc/contributing.texi (Running Guix Before It Is Installed): Writing "Do <this>. But it won't work unless ..." is a bad practice. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Rostislav Svoboda 2021-10-25Add 'guix shell'....* guix/scripts/shell.scm, tests/guix-shell.sh: New files. * Makefile.am (MODULES): Add 'shell.scm'. (SH_TESTS): Add 'tests/guix-shell.sh'. * guix/scripts/environment.scm (show-environment-options-help): New procedure. (show-help): Use it. (guix-environment*): New procedure. (guix-environment): Use it. * po/guix/POTFILES.in: Add it. * doc/guix.texi (Features): Refer to "guix shell" (Invoking guix package): Likewise. (Development): Likewise. (Invoking guix shell): New node. (Invoking guix environment): Add deprecation warning. (Debugging Build Failures): Use 'guix shell' in examples. (Invoking guix container): Refer to 'guix shell'. (Invoking guix processes, Virtualization Services): Adjust examples to use 'guix shell'. * doc/contributing.texi (Building from Git): Refer to 'guix shell'. * etc/completion/bash/guix: Handle "shell". Ludovic Courtès 2021-10-14doc: Fix typo....* doc/contributing.texi (Configuring Git): s/respository/repository/ Marius Bakke 2021-10-04maint: Improve default diff hunk header detection....Tell git where to look for diff hunk headers: top-level definitions for Scheme files, and (sub)section headers for texi files. * .gitattributes, etc/git/gitconfig: New files. * doc/contributing.texi ("Submitting Patches"): Add subsection "Configuring Git". Document etc/git/gitconfig. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Sarah Morgensen 2021-09-22doc: Add item to "Submitting Patches" section....* doc/contributing.texi (Submitting Patches): Add item about 'git-format-patch --base'. Signed-off-by: Ludovic Courtès <ludo@gnu.org> zimoun 2021-07-05doc: Change Debbugs usertags user to "guix"....* doc/contributing.texi (Debbugs Usertags): Change the user for usertags from "guix-devel@gnu.org" to "guix". This was discussed on the guix-devel email list: <https://lists.gnu.org/archive/html/guix-devel/2021-06/msg00212.html>. Chris Marusich 2021-06-23doc: Document the use of Debbugs usertags....* doc/contributing.texi (Contributing): Update the short description of the "Tracking Bugs and Patches" chapter in the menu. (Tracking Bugs and Patches): Split this section into three new subsections, titled "The Issue Tracker", "Debbugs User Interfaces", and "Debbugs Usertags". Of these, only the "Debbugs Usertags" is actually new. Chris Marusich 2021-06-18doc: Clarify Git commit signing; fix typo....Suggested by Maxime Devos <maximedevos@telenet.be> and Julien Lepiller <julien@lepiller.eu>. * doc/contributing.texi (Commit Access): Clarify Git commit signing setup and fix typo. Ludovic Courtès 2021-06-18doc: Explain more reasons for commit revocation....* doc/contributing.texi (Commit Revocation): Expound. Ludovic Courtès 2021-06-18doc: Add "Addressing Issues" section....* doc/contributing.texi (Addressing Issues): New section. Co-authored-by: Christopher Baines <mail@cbaines.net> Ludovic Courtès 2021-06-18doc: Structure the "Commit Access" section....* doc/contributing.texi (Commit Access): Add introduction and section heading. Separate OpenPGP setup from commit policy. Ludovic Courtès 2021-06-18Start enabling substitutes from bordeaux.guix.gnu.org....In addition to substitutes from ci.guix.gnu.org. There are more changes that can be made in the future, but these changes seem like a good start. * config-daemon.ac (guix_substitute_urls): Add https://bordeaux.guix.gnu.org. * guix/scripts/substitute.scm (%default-substitute-urls): Add http://bordeaux.guix.gnu.org. * guix/store.scm (%default-substitute-urls): Add bordeaux.guix.gnu.org. * doc/guix.texi: Adjust accordingly. * doc/contributing.texi: Adjust accordingly. Christopher Baines 2021-06-06doc: Add reference for ‘git-version’ and ‘hg-version’....* doc/contributing.texi (Version Numbers): Document ‘git-version’ and ‘hg-version’. * doc/guix.texi (package Reference): Reference ‘Version Numbers’ section for version naming guidelines. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Xinglu Chen 2021-06-06doc: Pluralize "package."...* doc/contributing.texi (Submitting Patches): Pluralize "package." Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> Matthew James Kraai 2021-06-04doc: Mention virtualization module and add missing closing parenthesis....* doc/contributing.texi (Submitting Patches): Mention virtualization module and add missing closing parenthesis. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Solene Rapenne 2021-05-30doc: Fix typos....* doc/contributing.texi (Translating Guix): Fix ‘runnig’ typo. Replace ‘target’ with ‘command’ to match the verb. Fix ‘refered’ and ‘formating’ too. Tobias Geerinckx-Rice 2021-05-25doc: Remove reference to mips64....* doc/contributing.texi (Submitting Patches): Don't suggest building packages for mips64. Efraim Flashner 2021-05-23doc: Correct spelling...* doc/contributing.tex (Submitting Patches): Correct spelling of "acknowledgement" Co-authored-by: Piotr Kaznowski <piotr@kazno.dev> Signed-off-by: Marius Bakke <marius@gnu.org> Filip Lajszczak 2021-05-22doc: Add information about first patch....* doc/contributing.texi (Submitting Patches): Add information about first patch acnowledgement delay. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Filip Lajszczak 2021-05-20The #guix channel is hosted by Libera Chat....* README (Contact): Update network name. * ROADMAP: Likewise. * doc/contributing.texi (Contributing): Likewise. * doc/guix.texi (After System Installation): Likewise. Tobias Geerinckx-Rice 2021-05-13doc: Show how to enable Guile support for Geiser....* doc/contributing.texi (The Perfect Setup): Adjust "guix package -i" command line. Jelle Licht 2021-05-04doc: Fix typos....* doc/contributing.texi (Translating Guix): Fix ‘developpers’ and ‘superseeded’ typos. Use @var mark-up where appropriate. Tobias Geerinckx-Rice 2021-04-26doc: Clarify the utility of the development branches....* doc/contributing.texi (Submitting Patches): Clarify the utility of the 'staging' and 'core-updates' branches. Leo Famulari 2021-04-25doc: Document translation process....doc/contributing.texi (Translating Guix): New section. doc/guix.texi (Top): Add a reference to the new section. Julien Lepiller 2021-04-04doc: Remind developers to build Guix....The previous instructions were correct, but we got too many bug reports with a root cause of "did not build Guix yet". Other parts of the manual already instruct `make && make check`, so this makes the treatment of building Guix more consistent, too. * doc/contributing.texi (Building from Git): Instruct the user to run `make` when building Guix. Leo Famulari 2021-04-01doc: Discourage ambiguous package names....* doc/contributing.texi (Package Naming): Explicitly mention single-character and otherwise ambiguous names. Tobias Geerinckx-Rice via Bug reports for GNU Guix