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;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2020 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.

(define-module (gnu services science)
  #:export (<rshiny-configuration>
            rshiny-configuration
            rshiny-configuration?
            rshiny-configuration-package
            rshiny-configuration-binary
            rshiny-shepherd-service
            rshiny-service-type))

(use-modules (gnu)
             (guix records)
             (ice-9 match))
(use-service-modules shepherd)
(use-package-modules cran)

(define-record-type* <rshiny-configuration>
  rshiny-configuration
  make-rshiny-configuration
  rshiny-configuration?
  (package          rshiny-configuration-package    ; file-like
                    (default r-shiny))
  (binary           rshiny-configuration-binary     ; string
                    (default "rshiny")))

(define rshiny-shepherd-service
  (match-lambda
    (($ <rshiny-configuration> package binary)
     (list
       (shepherd-service
         (documentation (string-append "R-Shiny service for " binary))
         (provision (list (symbol-append 'rshiny- (string->symbol
                                                    (string-take binary 9)))))
         (requirement '(networking))
         (start
           #~(exec-command
               (list
                 #$(string-append "/run/current-system/profile/bin/" binary))
               ;#:log-file #$(string-append "/var/log/" binary ".log") ; kills shepherd
               #:environment-variables
               (list "R_LIBS_USER=/run/current-system/profile/site-library/")))
         (stop #~(make-kill-destructor)))))))

(define rshiny-service-type
  (service-type
    (name 'rshiny)
    (extensions
      (list
        (service-extension shepherd-root-service-type
                           rshiny-shepherd-service)
        (service-extension profile-service-type
                           ;; We want the package installed so that it
                           ;; pulls in the propagated inputs as well.
                           (lambda (config)
                             (list
                               (rshiny-configuration-package config))))))
    (description
     "Run an R-Shiny webapp as a Guix Service.")))
06622da6272bc809c46d1f439'>tests: Adjust to SRFI-64 as found in Guile 3.0.7....In Guile 3.0.7, 'test-runner-current' is set to #f upon 'test-end'. Consequently, the previous strategy, where we'd call 'test-runner-current' after 'test-end', no longer works. Instead, set the test runner in each test right before 'test-begin'. * gnu/build/marionette.scm (system-test-runner): New procedure. * gnu/tests/audio.scm (run-mpd-test): Replace (exit (= ...)) idiom by (test-runner-current (system-test-runner)). * gnu/tests/base.scm (run-basic-test) (run-cleanup-test, run-mcron-test, run-nss-mdns-test): Likewise. * gnu/tests/ci.scm (run-laminar-test): Likewise. * gnu/tests/cups.scm (run-cups-test): Likewise. * gnu/tests/databases.scm (run-memcached-test) (run-postgresql-test, run-mysql-test): Likewise. * gnu/tests/desktop.scm (run-elogind-test): Likewise. * gnu/tests/dict.scm (run-dicod-test): Likewise. * gnu/tests/docker.scm (run-docker-test): Likewise. (run-docker-system-test): Likewise. * gnu/tests/file-sharing.scm (run-transmission-daemon-test): Likewise. * gnu/tests/ganeti.scm (run-ganeti-test): Likewise. * gnu/tests/guix.scm (run-guix-build-coordinator-test): Likewise. (run-guix-data-service-test): Likewise. * gnu/tests/ldap.scm (run-ldap-test): Likewise. * gnu/tests/linux-modules.scm (run-loadable-kernel-modules-test-base): Likewise. * gnu/tests/mail.scm (run-opensmtpd-test) (run-exim-test, run-dovecot-test, run-getmail-test): Likewise. * gnu/tests/messaging.scm (run-xmpp-test) (run-bitlbee-test, run-quassel-test): Likewise. * gnu/tests/monitoring.scm (run-prometheus-node-exporter-server-test) (run-zabbix-server-test): Likewise. * gnu/tests/networking.scm (run-inetd-test, run-openvswitch-test) (run-dhcpd-test, run-tor-test, run-iptables-test, run-ipfs-test): Likewise. * gnu/tests/nfs.scm (run-nfs-test) (run-nfs-server-test, run-nfs-root-fs-test): Likewise. * gnu/tests/package-management.scm (run-nix-test): Likewise. * gnu/tests/reconfigure.scm (run-switch-to-system-test) (run-upgrade-services-test, run-install-bootloader-test): Likewise. * gnu/tests/rsync.scm (run-rsync-test): Likewise. * gnu/tests/security-token.scm (run-pcscd-test): Likewise. * gnu/tests/singularity.scm (run-singularity-test): Likewise. * gnu/tests/ssh.scm (run-ssh-test): Likewise. * gnu/tests/telephony.scm (run-jami-test): Likewise. * gnu/tests/version-control.scm (run-cgit-test): Likewise. (run-git-http-test, run-gitolite-test, run-gitile-test): Likewise. * gnu/tests/virtualization.scm (run-libvirt-test, run-childhurd-test): Likewise. * gnu/tests/web.scm (run-webserver-test, run-php-fpm-test) (run-hpcguix-web-server-test, run-tailon-test, run-patchwork-test): Likewise. Ludovic Courtès 2020-04-21tests: ssh: Explicitly wait for port 22....Previously we could occasionally try to connect before the server is actually listening, both for OpenSSH and Dropbear. * gnu/tests/ssh.scm (run-ssh-test)["wait for port 22"]: New test. Ludovic Courtès 2019-05-09services: Log-in services now require "pam_loginuid"....Fixes <https://bugs.gnu.org/35553>. Reported by Bruno Haible <bruno@clisp.org>. * gnu/services/base.scm (login-pam-service): Pass #:login-uid? #t to 'unix-pam-service'. * gnu/services/ssh.scm (lsh-pam-services, openssh-pam-services): Likewise. * gnu/services/xorg.scm (slim-pam-service): Likewise. (gdm-pam-service): Likewise for "gdm-autologin" and "gdm-password". * gnu/tests/base.scm (run-basic-test)["getlogin on tty1"]: New test. * gnu/tests/ssh.scm (run-ssh-test): Add #:test-getlogin? parameter. ["getlogin"]: New test. (%test-dropbear): Pass #:test-getlogin? #f. Ludovic Courtès 2018-10-18services: dhcp-client: Deprecate 'dhcp-client-service' procedure....* gnu/services/networking.scm (dhcp-client-service-type): Add default value. * gnu/system/examples/bare-bones.tmpl: Use (service dhcp-client-service-type) instead of (dhcp-client-service). * gnu/system/examples/beaglebone-black.tmpl: Likewise. * gnu/tests/base.scm (%avahi-os): Likewise. * gnu/tests/databases.scm (%memcached-os): Likewise. (%mongodb-os): Likewise. * gnu/tests/dict.scm (%dicod-os): Likewise. * gnu/tests/mail.scm (%opensmtpd-os): Likewise. (%exim-os): Likewise. (%dovecot-os): Likewise. * gnu/tests/messaging.scm (run-xmpp-test): Likewise. (run-bitlbee-test): Likewise. * gnu/tests/monitoring.scm (%prometheus-node-exporter-os): Likewise. * gnu/tests/networking.scm (%inetd-os): Likewise. (run-iptables-test): Likewise. * gnu/tests/nfs.scm (%base-os): Likewise. * gnu/tests/rsync.scm (%rsync-os): Likewise. * gnu/tests/ssh.scm (run-ssh-test): Likewise. * gnu/tests/version-control.scm (%cgit-os): Likewise. (%git-http-os): Likewise. (%gitolite-os): Likewise. * gnu/tests/virtualization.scm (%libvirt-os): Likewise. * gnu/tests/web.scm (%httpd-os): Likewise. (%nginx-os): Likewise. (%varnish-os): Likewise. (%php-fpm-os): Likewise. (%hpcguix-web-os): Likewise. (%tailon-os): Likewise. * tests/guix-system.sh: Likewise. * doc/guix.texi (Networking Services): Document 'dhcp-client-service-type' and remove 'dhcp-client-service'. Ludovic Courtès 2018-06-13tests: Honor the return value of 'start-service'....Since commit dc7b3e56337ee9d8dcd8fe7d5cab71ef536d024f, 'start-service' returns the Shepherd's representation of the service as a sexp, and '#f' if the service fails to start. Also, it doesn't throw an exception when the service fails to start, so relying on an exception instead of relying on its return value is a false positive. * gnu/tests/base.scm (run-nss-mdns-test): Split tests so to check the return value of 'start-service'. (run-mcron-test, run-nss-mdns-test): Use 'test-assert' with the return value of 'start-service'. * gnu/tests/admin.scm (run-tailon-test): Idem. * gnu/tests/dict.scm (run-dicod-test): Idem. * gnu/tests/mail.scm (run-opensmtpd-test, run-exim-test, run-dovecot-test): Idem. * gnu/tests/messaging.scm (run-xmpp-test, run-bitlbee-test): Idem. * gnu/tests/nfs.scm (run-nfs-test): Idem. * gnu/tests/rsync.scm (run-rsync-test): Idem. * gnu/tests/ssh.scm (run-ssh-test): Idem. * gnu/tests/version-control.scm (run-cgit-test, run-git-http-test): Idem. * gnu/tests/web.scm (run-php-fpm-test): Idem. Clément Lassieur 2018-06-01tests: ssh: Use 'with-extensions'....* gnu/tests/ssh.scm (run-ssh-test)[test]: Wrap body in 'with-extensions'. Remove %load-path manipulation code. Ludovic Courtès 2017-11-01tests: ssh: Make sure we can run executables from PATH....* gnu/tests/ssh.scm (run-ssh-test): Add tests for running commands in system and user profile. Marius Bakke 2017-07-23Merge branch 'master' into core-updatesLeo Famulari 2017-07-20tests: Use 'virtual-machine' records instead of monadic procedures....* gnu/tests/base.scm (%test-basic-os): Use 'let*' instead of 'mlet*' and 'virtual-machine' instead of 'system-qemu-image/shared-store-script'. (run-mcron-test): Likewise. (run-nss-mdns-test): Likewise. * gnu/tests/dict.scm (run-dicod-test): Likewise. * gnu/tests/mail.scm (run-opensmtpd-test): Likewise. (run-exim-test): Likewise. * gnu/tests/messaging.scm (run-xmpp-test): Likewise. * gnu/tests/networking.scm (run-inetd-test): Likewise. * gnu/tests/nfs.scm (run-nfs-test): Likewise. * gnu/tests/ssh.scm (run-ssh-test): Likewise. * gnu/tests/web.scm (run-nginx-test): Likewise. Ludovic Courtès 2017-07-18tests: ssh: Use 'guile-ssh'....* gnu/tests/ssh.scm (run-ssh-test): Use GUILE-SSH instead of GUILE2.0-SSH. Ludovic Courtès 2017-06-12marionette: Factorize 'wait-for-file'....* gnu/build/marionette.scm (wait-for-file): New procedure. * gnu/tests/base.scm (run-mcron-test)[test](wait-for-file): Remove. Pass second argument in 'wait-for-file' calls. * gnu/tests/ssh.scm (run-ssh-test)[test](wait-for-file): Remove. Pass second argument in 'wait-for-file' calls. * gnu/tests/messaging.scm (run-xmpp-test)[test](guest-wait-for-file): Remove. Use 'wait-for-file' instead, with second argument. Ludovic Courtès