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;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2020 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.

(define-module (gnu services science)
  #:export (<rshiny-configuration>
            rshiny-configuration
            rshiny-configuration?
            rshiny-configuration-package
            rshiny-configuration-binary
            rshiny-shepherd-service
            rshiny-service-type))

(use-modules (gnu)
             (guix records)
             (ice-9 match))
(use-service-modules shepherd)
(use-package-modules cran)

(define-record-type* <rshiny-configuration>
  rshiny-configuration
  make-rshiny-configuration
  rshiny-configuration?
  (package          rshiny-configuration-package    ; file-like
                    (default r-shiny))
  (binary           rshiny-configuration-binary     ; string
                    (default "rshiny")))

(define rshiny-shepherd-service
  (match-lambda
    (($ <rshiny-configuration> package binary)
     (list
       (shepherd-service
         (documentation (string-append "R-Shiny service for " binary))
         (provision (list (symbol-append 'rshiny- (string->symbol
                                                    (string-take binary 9)))))
         (requirement '(networking))
         (start
           #~(exec-command
               (list
                 #$(string-append "/run/current-system/profile/bin/" binary))
               ;#:log-file #$(string-append "/var/log/" binary ".log") ; kills shepherd
               #:environment-variables
               (list "R_LIBS_USER=/run/current-system/profile/site-library/")))
         (stop #~(make-kill-destructor)))))))

(define rshiny-service-type
  (service-type
    (name 'rshiny)
    (extensions
      (list
        (service-extension shepherd-root-service-type
                           rshiny-shepherd-service)
        (service-extension profile-service-type
                           ;; We want the package installed so that it
                           ;; pulls in the propagated inputs as well.
                           (lambda (config)
                             (list
                               (rshiny-configuration-package config))))))
    (description
     "Run an R-Shiny webapp as a Guix Service.")))
he package switched from a mirror:// URL to a ftp:// URL, but there doesn't appear to have been any particular reason for that. * gnu/packages/gnupg.scm (gnupg)[source]{uri}: Use a mirror:// again. Signed-off-by: Marius Bakke <marius@gnu.org> Maxime Devos 2022-08-09gnu: gnupg: Patch CVE-2022-34903....* gnu/packages/gnupg.scm (gnupg)[replacement]: New field. (gnupg/replacement): New variable. * gnu/packages/patches/gnupg-CVE-2022-34903.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner 2022-05-29gnu: pgpdump: Update to 0.35....* gnu/packages/gnupg.scm (pgpdump): Update to 0.35. Tobias Geerinckx-Rice 2022-05-31gnu: pius: Update to 3.0.0....* gnu/packages/gnupg.scm (pius): Update to 3.0.0. [arguments]: Delete tests? and python arguments. [phases]{set-gpg-file-name}: Streamline. [description]: Spell key signing as two words. Mark commands with Texinfo markup. Maxim Cournoyer 2022-05-31gnu: Remove python2-pygpgme....* gnu/packages/gnupg.scm (python2-pygpgme): Delete variable. Maxim Cournoyer 2022-05-31gnu: Remove python2-gpg....* gnu/packages/gnupg.scm (python2-gpg): Delete variable. Maxim Cournoyer