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;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2020 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.

(define-module (gnu services science)
  #:export (<rshiny-configuration>
            rshiny-configuration
            rshiny-configuration?
            rshiny-configuration-package
            rshiny-configuration-binary
            rshiny-shepherd-service
            rshiny-service-type))

(use-modules (gnu)
             (guix records)
             (ice-9 match))
(use-service-modules shepherd)
(use-package-modules cran)

(define-record-type* <rshiny-configuration>
  rshiny-configuration
  make-rshiny-configuration
  rshiny-configuration?
  (package          rshiny-configuration-package    ; file-like
                    (default r-shiny))
  (binary           rshiny-configuration-binary     ; string
                    (default "rshiny")))

(define rshiny-shepherd-service
  (match-lambda
    (($ <rshiny-configuration> package binary)
     (list
       (shepherd-service
         (documentation (string-append "R-Shiny service for " binary))
         (provision (list (symbol-append 'rshiny- (string->symbol
                                                    (string-take binary 9)))))
         (requirement '(networking))
         (start
           #~(exec-command
               (list
                 #$(string-append "/run/current-system/profile/bin/" binary))
               ;#:log-file #$(string-append "/var/log/" binary ".log") ; kills shepherd
               #:environment-variables
               (list "R_LIBS_USER=/run/current-system/profile/site-library/")))
         (stop #~(make-kill-destructor)))))))

(define rshiny-service-type
  (service-type
    (name 'rshiny)
    (extensions
      (list
        (service-extension shepherd-root-service-type
                           rshiny-shepherd-service)
        (service-extension profile-service-type
                           ;; We want the package installed so that it
                           ;; pulls in the propagated inputs as well.
                           (lambda (config)
                             (list
                               (rshiny-configuration-package config))))))
    (description
     "Run an R-Shiny webapp as a Guix Service.")))
gnu/packages/ssh.scm?id=c919bfefd98bf2e29549539b4e28e6dc2a8a6f32'>Merge remote-tracking branch 'origin/master' into core-updatesAndreas Enge 2023-04-25gnu: python-asyncssh: Update to 2.13.1....Includes fix for python-cryptography>=39 disallowing SHA-1 signatures, which caused the testsuite to fail. * gnu/packages/ssh.scm (python-asyncssh): Update to 2.13.1. Lars-Dominik Braun 2023-04-19gnu: python-typing-extensions: Move to (gnu packages python-build)....* gnu/packages/python-xyz.scm (python-typing-extensions): Move to... * gnu/packages/python-build.scm (python-typing-extensions): ... here. Maxim Cournoyer 2023-04-14Merge branch 'master' into core-updates....Conflicts: gnu/local.mk gnu/packages/build-tools.scm gnu/packages/certs.scm gnu/packages/check.scm gnu/packages/compression.scm gnu/packages/cups.scm gnu/packages/fontutils.scm gnu/packages/gnuzilla.scm gnu/packages/guile.scm gnu/packages/ibus.scm gnu/packages/image-processing.scm gnu/packages/linux.scm gnu/packages/music.scm gnu/packages/nss.scm gnu/packages/pdf.scm gnu/packages/python-xyz.scm gnu/packages/qt.scm gnu/packages/ruby.scm gnu/packages/shells.scm gnu/packages/tex.scm gnu/packages/video.scm gnu/packages/vulkan.scm gnu/packages/web.scm gnu/packages/webkit.scm gnu/packages/wm.scm Maxim Cournoyer 2023-03-22gnu: OpenSSH: Update to 9.3p1 [security fixes]....The release announcement contains more information about the security vulnerabilities fixed in this update: https://www.openssh.com/txt/release-9.3 * gnu/packages/ssh.scm (openssh): Update to 9.3p1. Leo Famulari 2023-03-02Merge remote-tracking branch 'savannah/master' into core-updates...Conflicts: gnu/local.mk gnu/packages/autotools.scm gnu/packages/cmake.scm gnu/packages/gnuzilla.scm gnu/packages/haskell.scm gnu/packages/pdf.scm gnu/packages/python-xyz.scm gnu/packages/samba.scm gnu/packages/tex.scm gnu/packages/tls.scm gnu/packages/wxwidgets.scm Christopher Baines 2023-02-27gnu: libssh: Fix compilation on GNU/Hurd....* gnu/packages/ssh.scm (libssh)[source]: Add snippet. Ludovic Courtès 2023-02-26gnu: libssh: Update to 0.10.4....* gnu/packages/ssh.scm (libssh): Update to 0.10.4. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Vagrant Cascadian 2023-02-23gnu: Add x11-ssh-askpass....* gnu/packages/ssh.scm (x11-ssh-askpass): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Simon Streit 2023-02-20gnu: sshpass: Update to 1.10....* gnu/packages/ssh.scm (sshpass): Update to 1.10. Nicolas Goaziou