aboutsummaryrefslogtreecommitdiff
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2021 Lars-Dominik Braun <lars@6xq.net>
;;; Copyright © 2022, 2023 John Kehayias <john.kehayias@protonmail.com>
;;;
;;; This program is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; This program is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with this program.  If not, see <http://www.gnu.org/licenses/>.

(define-module (gnu packages rocm)
  #:use-module ((guix licenses) #:prefix license:)
  #:use-module (guix packages)
  #:use-module (guix download)
  #:use-module (guix gexp)
  #:use-module (guix utils)
  #:use-module (guix git-download)
  #:use-module (guix build-system cmake)
  #:use-module (gnu packages)
  #:use-module (gnu packages elf)
  #:use-module (gnu packages gcc)
  #:use-module (gnu packages gl)
  #:use-module (gnu packages linux)
  #:use-module (gnu packages llvm)
  #:use-module (gnu packages opencl)
  #:use-module (gnu packages pkg-config)
  #:use-module (gnu packages version-control)
  #:use-module (gnu packages vim)
  #:use-module (gnu packages xdisorg))

;; The components are tightly integrated and can only be upgraded as a unit. If
;; you want to upgrade ROCm, bump this version number and update hashes below.
(define %rocm-version "5.6.0")

(define-public rocm-cmake
  (package
    (name "rocm-cmake")
    (version %rocm-version)
    (source (origin
              (method git-fetch)
              (uri (git-reference
                    (url "https://github.com/RadeonOpenCompute/rocm-cmake.git")
                    (commit (string-append "rocm-" version))))
              (file-name (git-file-name name version))
              (sha256
               (base32
                "183s2ksn142r7nl7l56qvyrgvvkdgqfdzmgkfpp4a6g9mjp88ady"))))
    (build-system cmake-build-system)
    (arguments `(#:tests? #f)) ; Tests try to use git commit
    (native-inputs (list git))
    (home-page "https://github.com/RadeonOpenCompute/rocm-cmake")
    (synopsis "ROCm cmake modules")
    (description "ROCm cmake modules provides cmake modules for common build
tasks needed for the ROCM software stack.")
    (license license:ncsa)))

(define-public rocm-device-libs
  (package
    (name "rocm-device-libs")
    (version %rocm-version)
    (source (origin
              (method git-fetch)
              (uri (git-reference
                    (url "https://github.com/RadeonOpenCompute/ROCm-Device-Libs.git")
                    (commit (string-append "rocm-" version))))
              (file-name (git-file-name name version))
              (sha256
               (base32
                "1jg96ycy99s9fis8sk1b7qx5p33anw16mqlm07zqbnhry2gqkcbh"))))
    (build-system cmake-build-system)
    (arguments
     `(#:configure-flags
       (list "-DCMAKE_SKIP_BUILD_RPATH=FALSE"
             "-DCMAKE_BUILD_WITH_INSTALL_RPATH=FALSE")))
    (inputs (list llvm-for-rocm))
    (home-page "https://github.com/RadeonOpenCompute/ROCm-Device-Libs")
    (synopsis "ROCm Device libraries")
    (description "AMD-specific device-side language runtime libraries, namely
oclc, ocml, ockl, opencl, hip and hc.")
    (license license:ncsa)))

(define-public rocm-comgr
  (package
    (name "rocm-comgr")
    (version %rocm-version)
    (source (origin
              (method git-fetch)
              (uri (git-reference
                    (url "https://github.com/RadeonOpenCompute/ROCm-CompilerSupport.git")
                    (commit (string-append "rocm-" version))))
              (file-name (git-file-name name version))
              (sha256
               (base32
                "15s2dx0pdvjv3xfccq5prkplcbwps8x9jas5qk93q7kv8wx57p3b"))
              (patches
               (search-patches "rocm-comgr-3.1.0-dependencies.patch"))))
    (build-system cmake-build-system)
    (arguments
     `(#:phases
       (modify-phases %standard-phases
         (add-after 'unpack 'chdir
           (lambda _
             (chdir "lib/comgr"))))))
    (inputs (list llvm-for-rocm rocm-device-libs))
    (home-page "https://github.com/RadeonOpenCompute/ROCm-CompilerSupport")
    (synopsis "ROCm Code Object Manager")
    (description "The Comgr library provides APIs for compiling and inspecting
AMDGPU code objects.")
    (license license:ncsa)))

(define-public roct-thunk-interface
  (package
    (name "roct-thunk-interface")
    (version %rocm-version)
    (source (origin
              (method git-fetch)
              (uri (git-reference
                    (url "https://github.com/RadeonOpenCompute/ROCT-Thunk-Interface.git")
                    (commit (string-append "rocm-" version))))
              (file-name (git-file-name name version))
              (sha256
               (base32
                "0v8j4gkbb21gqqmz1b4nmampx5ywva99ipsx8lcjr5ckcg84fn9x"))))
    (build-system cmake-build-system)
    (arguments `(#:tests? #f)) ; Not sure how to run tests.
    (inputs (list libdrm numactl))
    (native-inputs (list `(,gcc "lib") pkg-config))
    (home-page "https://github.com/RadeonOpenCompute/ROCT-Thunk-Interface")
    (synopsis "Radeon Open Compute Thunk Interface")
    (description "User-mode API interfaces used to interact with the ROCk
driver.")
    (license license:ncsa)))

(define-public rocr-runtime
  (package
    (name "rocr-runtime")
    (version %rocm-version)
    (source (origin
              (method git-fetch)
              (uri (git-reference
                    (url "https://github.com/RadeonOpenCompute/ROCR-Runtime.git")
                    (commit (string-append "rocm-" version))))
              (file-name (git-file-name name version))
              (sha256
               (base32
                "07wh7s1kgvpw8ydxmr2wvvn05fdqcmcc20qjbmnc3cbbhxviksyr"))))
    (build-system cmake-build-system)
    (arguments
     (list
      #:tests? #f ; No tests.
      #:phases
      #~(modify-phases %standard-phases
          (add-after 'unpack 'add-rocm-device-lib-path
            (lambda _
              (substitute* "src/image/blit_src/CMakeLists.txt"
                (("-O2")
                 (string-append
                  "-O2 --rocm-device-lib-path="
                  #$(this-package-input "rocm-device-libs")
                  "/amdgcn/bitcode/")))))
          (add-after 'add-rocm-device-lib-path 'chdir
            (lambda _
              (chdir "src"))))))
    (inputs
     (list libdrm
           libelf
           llvm-for-rocm
           numactl
           rocm-device-libs ; For bitcode.
           roct-thunk-interface))
    (native-inputs (list pkg-config xxd))
    (home-page "https://github.com/RadeonOpenCompute/ROCR-Runtime")
    (synopsis "ROCm Platform Runtime")
    (description "User-mode API interfaces and libraries necessary for host
applications to launch compute kernels to available HSA ROCm kernel agents.")
    (license license:ncsa)))

;; This is the source only for ROCclr as from v4.5 it should only be built as
;; part of a client.  A warning is output if attempting to build stand-alone
;; and there is no install.
(define rocclr-src
  (origin
    (method git-fetch)
    (uri (git-reference
          (url "https://github.com/ROCm-Developer-Tools/ROCclr.git")
          (commit (string-append "rocm-" %rocm-version))))
    (sha256
     (base32
      "1fzvnngxcvxscn718cqfglm4izccx88zjdr3g5ldfqw7hyd034sk"))
    (patches (search-patches "rocclr-5.6.0-enable-gfx800.patch"))))

(define-public rocm-opencl-runtime
  (package
    (name "rocm-opencl-runtime")
    (version %rocm-version)
    (home-page "https://github.com/RadeonOpenCompute/ROCm-OpenCL-Runtime")
    (source (origin
              (method git-fetch)
              (uri (git-reference
                    (url home-page)
                    (commit (string-append "rocm-" version))))
              (file-name (git-file-name name version))
              (sha256
               (base32
                "1azfxf0ac3mnbyfgn30bz5glwlmaigzdz0cd29jzc4b05hks1yr3"))
              (patches
               (search-patches
                ;; Guix includes a program clinfo already.
                "rocm-opencl-runtime-4.3-noclinfo.patch"))))
    (build-system cmake-build-system)
    (arguments
     (list
      #:tests? #f ; Not sure how to run them.
      #:configure-flags
      #~(list
         (string-append "-DAMD_OPENCL_PATH=" #$(package-source this-package))
         ;; The ROCclr source is needed to build the runtime.
         (string-append "-DROCCLR_PATH=" #$rocclr-src)
         (string-append "-DROCM_PATH=" #$output)
         ;; Don't build the ICD loader as we have the opencl-icd-loader
         ;; package already.
         "-DBUILD_ICD=OFF"
         ;; Don't duplicate the install in an "opencl" directory as well.
         "-DFILE_REORG_BACKWARD_COMPATIBILITY=OFF")
      #:phases
      #~(modify-phases %standard-phases
          (add-after 'install 'create-icd
            ;; Manually install ICD, which simply consists of dumping
            ;; the path of the .so into the correct file.
            (lambda* (#:key outputs #:allow-other-keys)
              (let* ((vendors (string-append #$output "/etc/OpenCL/vendors"))
                     (sopath (string-append #$output "/lib/libamdocl64.so")))
                (mkdir-p vendors)
                (with-output-to-file (string-append vendors "/amdocl64.icd")
                  (lambda _ (display sopath)))))))))
    (inputs
     (list glew
           mesa
           numactl
           opencl-headers
           opencl-icd-loader
           rocm-comgr
           rocr-runtime))
    (synopsis "ROCm OpenCL Runtime")
    (description "OpenCL 2.0 compatible language runtime, supporting offline
and in-process/in-memory compilation.")
    (license license:ncsa)))

(define-public rocminfo
  (package
    (name "rocminfo")
    (version %rocm-version)
    (source (origin
              (method git-fetch)
              (uri (git-reference
                    (url "https://github.com/RadeonOpenCompute/rocminfo.git")
                    (commit (string-append "rocm-" version))))
              (file-name (git-file-name name version))
              (sha256
               (base32
                "150bvyxp9krq8f7jqd1g5b4l85rih4ch322y4sg1hnciqpabn6a6"))))
    (build-system cmake-build-system)
    (arguments
     (list
      #:tests? #f ; No tests.
      #:phases
      #~(modify-phases %standard-phases
          (add-after 'unpack 'patch-binary-paths
            (lambda* (#:key inputs #:allow-other-keys)
              (substitute* "rocminfo.cc"
                (("lsmod")
                 (search-input-file inputs "bin/lsmod"))
                (("grep") (search-input-file inputs "bin/grep"))))))))
    (inputs
     (list rocr-runtime kmod))
    (home-page "https://github.com/RadeonOpenCompute/rocminfo")
    (synopsis "ROCm Application for Reporting System Info")
    (description "List @acronym{HSA,Heterogeneous System Architecture} Agents
available to ROCm and show their properties.")
    (license license:ncsa)))

(define-public rocm-bandwidth-test
  (package
    (name "rocm-bandwidth-test")
    (version %rocm-version)
    (source (origin
              (method git-fetch)
              (uri (git-reference
                    (url "https://github.com/RadeonOpenCompute/rocm_bandwidth_test.git")
                    (commit (string-append "rocm-" version))))
              (file-name (git-file-name name version))
              (sha256
               (base32
                "0ca6r8xijw3a3hrlgkqqsf3iqyia6sdmidgmjl12f5vypxzp5kmm"))
              (patches (search-patches "rocm-bandwidth-test-5.5.0-fix-includes.patch"))))
    (build-system cmake-build-system)
    (arguments `(#:tests? #f)) ; No tests.
    (inputs (list rocr-runtime))
    (home-page "https://github.com/RadeonOpenCompute/rocm_bandwidth_test")
    (synopsis "Bandwidth test for ROCm")
    (description "RocBandwidthTest is designed to capture the performance
characteristics of buffer copying and kernel read/write operations. The help
screen of the benchmark shows various options one can use in initiating
cop/read/writer operations.  In addition one can also query the topology of the
system in terms of memory pools and their agents.")
    (license license:ncsa)))

r-spatstat-geom) (r-spatstat-core, r-spatstat-linnet, r-spatstat-random, r-spatstat) (r-rcpptoml, r-mlecens, r-seurat, r-mlearning, r-zooimage)[home-page]: Likewise. * gnu/packages/crates-io.scm (rust-nickel-0.11, rust-thrift-0.13) (rust-trust-dns-https-0.20, rust-trust-dns-native-tls-0.20) (rust-trust-dns-openssl-0.20, rust-trust-dns-proto-0.20) (rust-trust-dns-resolver-0.20, rust-trust-dns-rustls-0.20) (rust-uint-0.9, rust-yaml-rust-0.4)[home-page]: Likewise. * gnu/packages/crypto.scm (libdecaf, ccrypt)[home-page]: Likewise. * gnu/packages/curl.scm (curlpp)[home-page]: Likewise. * gnu/packages/databases.scm (python-pylibmc, unixodbc, wiredtiger) (libpqxx, mdbtools, virtuoso-ose, libdbi, libdbi-drivers) (soci)[home-page]: Likewise. * gnu/packages/debian.scm (apt-mirror)[home-page]: Likewise. * gnu/packages/debug.scm (remake)[home-page]: Likewise. * gnu/packages/disk.scm (sdparm, idle3-tools, duc)[home-page]: Likewise. * gnu/packages/django.scm (python-django-haystack)[home-page]: Likewise. * gnu/packages/djvu.scm (djvulibre, djview)[home-page]: Likewise. * gnu/packages/dns.scm (dnsmasq)[home-page]: Likewise. * gnu/packages/docbook.scm (dblatex, docbook2x)[home-page]: Likewise. * gnu/packages/documentation.scm (scrollkeeper)[home-page]: Likewise. * gnu/packages/ebook.scm (liblinebreak)[home-page]: Likewise. * gnu/packages/electronics.scm (xoscope)[home-page]: Likewise. * gnu/packages/emacs-xyz.scm (emacs-bbdb, emacs-caps-lock, emacs-djvu) (emacs-pabbrev, emacs-twittering-mode, emacs-filladapt, emacs-rudel) (emacs-stream, emacspeak, emacs-cc-mode, emacs-eldoc, emacs-jsonrpc) (emacs-gtk-look, emacs-xclip, emacs-slime-volleyball, emacs-minimap) (emacs-auto-dictionary-mode, emacs-persist, emacs-shell-command+) (emacs-map, emacs-xref, emacs-dictionary)[home-page]: Likewise. * gnu/packages/embedded.scm (sdcc)[home-page]: Likewise. * gnu/packages/engineering.scm (asco, libngspice, libspnav) (openctm)[home-page]: Likewise. * gnu/packages/erlang.scm (erlang-erlware-commons)[home-page]: Likewise. * gnu/packages/file-systems.scm (jfsutils, curlftpfs)[home-page]: Likewise. * gnu/packages/finance.scm (gbonds)[home-page]: Likewise. * gnu/packages/flashing-tools.scm (dfu-util, srecord)[home-page]: Likewise. * gnu/packages/fltk.scm (ntk)[home-page]: Likewise. * gnu/packages/fonts.scm (font-terminus, font-tex-gyre) (font-comic-neue)[home-page]: Likewise. * gnu/packages/fontutils.scm (ttf2pt1, potrace, libspiro)[home-page]: Likewise. * gnu/packages/fpga.scm (icestorm, gtkwave, gtkwave) (python-myhdl)[home-page]: Likewise. * gnu/packages/freedesktop.scm (libatasmart)[home-page]: Likewise. * gnu/packages/ftp.scm (weex)[home-page]: Likewise. * gnu/packages/game-development.scm (dds, python-tmx, sfxr, quesoglc) (eureka, plib)[home-page]: Likewise. * gnu/packages/games.scm (abe, alex4, armagetronad, barony) (foobillard++, golly, ltris, pipewalker, prboom-plus, trigger-rally) (cmatrix, pinball, pioneers, tennix, chromium-bsu, freeciv, kiki) (quakespasm, frotz, frotz-dumb-terminal, frotz-sdl, btanks) (flare-engine, chessx, barrage, cgoban, passage)[home-page]: Likewise. * gnu/packages/geo.scm (python-geopandas, saga)[home-page]: Likewise. * gnu/packages/gl.scm (freeglut, gl2ps)[home-page]: Likewise. * gnu/packages/gnome.scm (cogl, clutter-gtk, clutter-gst, bluefish) (workrave)[home-page]: Likewise. * gnu/packages/gnustep.scm (wmnd, wmfire, wmfire)[home-page]: Likewise. * gnu/packages/graph.scm (mscgen)[home-page]: Likewise. * gnu/packages/graphics.scm (assimp, alembic, ctl, agg) (opencsg)[home-page]: Likewise. * gnu/packages/graphviz.scm (gts)[home-page]: Likewise. * gnu/packages/gtk.scm (gtkspell3)[home-page]: Likewise. * gnu/packages/guile-xyz.scm (guile-irregex)[home-page]: Likewise. * gnu/packages/haskell-apps.scm (cpphs)[home-page]: Likewise. * gnu/packages/haskell-check.scm (ghc-hunit)[home-page]: Likewise. * gnu/packages/haskell-web.scm (ghc-http-client-restricted) (ghc-blaze-html, ghc-happstack-server, ghc-sourcemap)[home-page]: Likewise. * gnu/packages/haskell-xyz.scm (ghc-assoc, ghc-cairo, ghc-cborg) (ghc-csv, ghc-glob, ghc-gtk2hs-buildtools, ghc-hmatrix-gsl-stats) (ghc-intervalmap, ghc-lens-family-core, ghc-managed, ghc-mountpoints) (ghc-network-multicast, ghc-optional-args, ghc-regex, ghc-spoon) (ghc-transformers, ghc-turtle, ghc-utf8-light, ghc-wizards) (ghc-template-haskell, ghc-boot-th, ghc-binary-orphans) (ghc-postgresql-simple)[home-page]: Likewise. * gnu/packages/hexedit.scm (ht, bvi)[home-page]: Likewise. * gnu/packages/hunspell.scm (hunspell-dict-hu)[home-page]: Likewise. * gnu/packages/image-processing.scm (mia)[home-page]: Likewise. * gnu/packages/image-viewers.scm (geeqie, gpicview, luminance-hdr) (qiv)[home-page]: Likewise. * gnu/packages/image.scm (libuemf, devil, steghide, optipng, niftilib) (sng, mtpaint)[home-page]: Likewise. * gnu/packages/java-xml.scm (java-simple-xml, java-jaxp) (java-apache-xml-commons-resolver)[home-page]: Likewise. * gnu/packages/java.scm (java-cisd-base, java-cisd-args4j) (java-hamcrest-core, java-jsr305, java-eclipse-osgi) (java-eclipse-equinox-common, java-eclipse-core-jobs) (java-eclipse-equinox-registry, java-eclipse-equinox-app) (java-eclipse-equinox-preferences, java-eclipse-core-contenttype) (java-eclipse-text, java-treelayout, java-aopalliance, java-jeromq) (java-cdi-api)[home-page]: Likewise. * gnu/packages/jemalloc.scm (jemalloc-4.5.0)[home-page]: Likewise. * gnu/packages/julia-xyz.scm (julia-recipespipeline)[home-page]: Likewise. * gnu/packages/kde-internet.scm (kget)[home-page]: Likewise. * gnu/packages/kde-systemtools.scm (dolphin-plugins) (konsole)[home-page]: Likewise. * gnu/packages/kodi.scm (fstrcmp)[home-page]: Likewise. * gnu/packages/language.scm (hime, libchewing)[home-page]: Likewise. * gnu/packages/lego.scm (nqc)[home-page]: Likewise. * gnu/packages/lesstif.scm (lesstif)[home-page]: Likewise. * gnu/packages/libcanberra.scm (libcanberra)[home-page]: Likewise. * gnu/packages/libdaemon.scm (libdaemon)[home-page]: Likewise. * gnu/packages/libffi.scm (libffi)[home-page]: Likewise. * gnu/packages/libreoffice.scm (libwpd, libwpg, libwps)[home-page]: Likewise. * gnu/packages/libusb.scm (libmtp, gmtp)[home-page]: Likewise. * gnu/packages/linux.scm (e2fsprogs, extundelete, lsscsi, net-tools) (kbd, sysfsutils, cpuid, libpfm4)[home-page]: Likewise. * gnu/packages/lisp-check.scm (sbcl-ptester, sbcl-xlunit)[home-page]: Likewise. * gnu/packages/lisp-xyz.scm (sbcl-html-encode, sbcl-py-configparser) (sbcl-cl-utilities, sbcl-series, sbcl-uffi, sbcl-clsql, sbcl-sycamore) (sbcl-osicat, sbcl-hu.dwim.common, sbcl-caveman, sbcl-trivial-shell) (sbcl-trivial-benchmark, sbcl-screamer, sbcl-smug)[home-page]: Likewise. * gnu/packages/lisp.scm (lush2)[home-page]: Likewise. * gnu/packages/logging.scm (log4cpp)[home-page]: Likewise. * gnu/packages/lua.scm (lua-ldoc)[home-page]: Likewise. * gnu/packages/machine-learning.scm (mcl, openfst, rxcpp)[home-page]: Likewise. * gnu/packages/mail.scm (muchsync, procmail, sendmail) (opensmtpd-filter-dkimsign, crm114)[home-page]: Likewise. * gnu/packages/man.scm (libpipeline, man-db)[home-page]: Likewise. * gnu/packages/maths.scm (lapack, scalapack, hdf-eos5, itpp, gmsh) (metamath, p4est, armadillo, suitesparse, atlas, lpsolve, wcalc, why3) (frama-c)[home-page]: Likewise. * gnu/packages/mcrypt.scm (mcrypt, libmcrypt, libmhash)[home-page]: Likewise. * gnu/packages/minetest.scm (minetest-advtrains)[home-page]: Likewise. * gnu/packages/monitoring.scm (python-whisper, python-carbon) (hostscope)[home-page]: Likewise. * gnu/packages/mp3.scm (id3lib, libmp3splt, mp3splt, mpg321) (lame)[home-page]: Likewise. * gnu/packages/multiprecision.scm (mpc)[home-page]: Likewise. * gnu/packages/music.scm (aria-maestosa, lingot, setbfree, bristol) (portmidi, python-pyportmidi, zynaddsubfx, yoshimi, aj-snapshot) (schismtracker, midicsv, midicsv, qmidiarp, qmidiroute, dssi, tap-lv2) (shiru-lv2)[home-page]: Likewise. * gnu/packages/ncurses.scm (stfl)[home-page]: Likewise. * gnu/packages/networking.scm (lksctp-tools, mbuffer, ifstatus, bird) (tunctl, traceroute)[home-page]: Likewise. * gnu/packages/node-xyz.scm (node-mersenne)[home-page]: Likewise. * gnu/packages/ntp.scm (openntpd)[home-page]: Likewise. * gnu/packages/ocaml.scm (opam, hevea, ocaml-menhir, ocaml-piqilib) (ocaml-graph, cubicle)[home-page]: Likewise. * gnu/packages/opencl.scm (python-pyopencl)[home-page]: Likewise. * gnu/packages/package-management.scm (xstow, modules)[home-page]: Likewise. * gnu/packages/parallel.scm (xjobs)[home-page]: Likewise. * gnu/packages/pdf.scm (podofo, qpdf, xournal, impressive)[home-page]: Likewise. * gnu/packages/perl.scm (perl-math-vecstat, perltidy)[home-page]: Likewise. * gnu/packages/photo.scm (libpano13, enblend-enfuse, hugin)[home-page]: Likewise. * gnu/packages/plan9.scm (drawterm)[home-page]: Likewise. * gnu/packages/plotutils.scm (guile-charting, ploticus)[home-page]: Likewise. * gnu/packages/popt.scm (argtable, popt)[home-page]: Likewise. * gnu/packages/profiling.scm (otf2)[home-page]: Likewise. * gnu/packages/pulseaudio.scm (pulseaudio)[home-page]: Likewise. * gnu/packages/python-check.scm (python-mypy)[home-page]: Likewise. * gnu/packages/python-web.scm (python-cssutils) (python-translationstring)[home-page]: Likewise. * gnu/packages/python-xyz.scm (python-diskcache, python-doxyqml) (python-docutils, python-pexpect, python-importlib-resources) (python-simplegeneric, python-urwid, python-xlrd, python-xlwt) (python-pyasn1, python-pythondialog, python-tftpy, python-random2) (python-arcp, python-pyopengl, python-sortedcollections) (python-sortedcontainers, python-yapsy, python-pydispatcher) (python-posix-ipc)[home-page]: Likewise. * gnu/packages/qt.scm (qwt, libqglviewer, signond)[home-page]: Likewise. * gnu/packages/radio.scm (unixcw, gnuais)[home-page]: Likewise. * gnu/packages/raspberry-pi.scm (bcm2835)[home-page]: Likewise. * gnu/packages/rdf.scm (clucene, rasqal, redland)[home-page]: Likewise. * gnu/packages/regex.scm (tre)[home-page]: Likewise. * gnu/packages/rsync.scm (librsync)[home-page]: Likewise. * gnu/packages/ruby.scm (ruby-packnga, ruby-nokogiri, ruby-oj, ruby-ox) (ruby-sinatra, ruby-citrus, ruby-cbor, ruby-roda)[home-page]: Likewise. * gnu/packages/scheme.scm (scheme48, tinyscheme)[home-page]: Likewise. * gnu/packages/screen.scm (dtach)[home-page]: Likewise. * gnu/packages/scsi.scm (sg3-utils)[home-page]: Likewise. * gnu/packages/sdl.scm (libmikmod, sdl-pango)[home-page]: Likewise. * gnu/packages/shellutils.scm (hstr, rig)[home-page]: Likewise. * gnu/packages/simulation.scm (python-dolfin-adjoint)[home-page]: Likewise. * gnu/packages/smalltalk.scm (smalltalk)[home-page]: Likewise. * gnu/packages/speech.scm (espeak)[home-page]: Likewise. * gnu/packages/stalonetray.scm (stalonetray)[home-page]: Likewise. * gnu/packages/statistics.scm (jags, r-mass, r-class, r-lattice) (r-matrix, r-nnet, r-spatial, r-bit, r-bit64, r-digest, r-xtable) (python-statsmodels, r-ade4, r-latticeextra, r-rcurl, r-xml, r-mvtnorm) (r-robustbase, r-minqa, r-fdrtool, java-jdistlib, xlispstat)[home-page]: Likewise. * gnu/packages/swig.scm (swig)[home-page]: Likewise. * gnu/packages/task-management.scm (wtime)[home-page]: Likewise. * gnu/packages/tcl.scm (itcl, tclxml, tclx)[home-page]: Likewise. * gnu/packages/terminals.scm (libtermkey, mlterm, libvterm) (libvterm)[home-page]: Likewise. * gnu/packages/tex.scm (texlive-lm, texlive-lm-math, texlive-cs) (texlive-csplain, biber, texmaker)[home-page]: Likewise. * gnu/packages/text-editors.scm (joe)[home-page]: Likewise. * gnu/packages/textutils.scm (drm-tools, docx2txt)[home-page]: Likewise. * gnu/packages/tv.scm (tvtime)[home-page]: Likewise. * gnu/packages/unicode.scm (libunibreak)[home-page]: Likewise. * gnu/packages/upnp.scm (libupnp)[home-page]: Likewise. * gnu/packages/version-control.scm (cvs)[home-page]: Likewise. * gnu/packages/video.scm (transcode, libquicktime, mjpegtools, aalib) (liba52, libmpeg2, x265, libdv, dvdauthor, aegisub, pitivi, gavl) (dvdbackup, guvcview, video-contact-sheet)[home-page]: Likewise. * gnu/packages/virtualization.scm (bochs)[home-page]: Likewise. * gnu/packages/w3m.scm (w3m)[home-page]: Likewise. * gnu/packages/web.scm (qjson, libquvi-scripts, libquvi, quvi) (tidy-html, htmlcxx)[home-page]: Likewise. * gnu/packages/wm.scm (evilwm, menumaker)[home-page]: Likewise. * gnu/packages/wv.scm (wv)[home-page]: Likewise. * gnu/packages/wxwidgets.scm (wxsvg)[home-page]: Likewise. * gnu/packages/xdisorg.scm (mtdev, xsel)[home-page]: Likewise. * gnu/packages/xfig.scm (xfig, transfig)[home-page]: Likewise. * gnu/packages/xml.scm (openjade, python-pyxb, xmlstarlet, xmlrpc-c) (opensp)[home-page]: Likewise. * gnu/packages/xorg.scm (xf86-video-qxl)[home-page]: Likewise. Tobias Geerinckx-Rice 2023-02-16gnu: Remove unneeded module imports....* gnu/packages/abiword.scm, * gnu/packages/ada.scm, * gnu/packages/agda.scm, * gnu/packages/backup.scm, * gnu/packages/barrier.scm, * gnu/packages/bioinformatics.scm, * gnu/packages/bootstrap.scm, * gnu/packages/bqn.scm, * gnu/packages/c.scm, * gnu/packages/chemistry.scm, * gnu/packages/coq.scm, * gnu/packages/cross-base.scm, * gnu/packages/databases.scm, * gnu/packages/emacs-xyz.scm, * gnu/packages/enlightenment.scm, * gnu/packages/games.scm, * gnu/packages/geo.scm, * gnu/packages/ghostscript.scm, * gnu/packages/gl.scm, * gnu/packages/golang.scm, * gnu/packages/jami.scm, * gnu/packages/java-maths.scm, * gnu/packages/kde-frameworks.scm, * gnu/packages/kde-plasma.scm, * gnu/packages/language.scm, * gnu/packages/libreoffice.scm, * gnu/packages/linphone.scm, * gnu/packages/lisp.scm, * gnu/packages/llvm.scm, * gnu/packages/machine-learning.scm, * gnu/packages/minetest.scm, * gnu/packages/monitoring.scm, * gnu/packages/nfs.scm, * gnu/packages/ocr.scm, * gnu/packages/opencl.scm, * gnu/packages/pdf.scm, * gnu/packages/python-xyz.scm, * gnu/packages/racket.scm, * gnu/packages/rust.scm, * gnu/packages/syncthing.scm, * gnu/packages/syndication.scm, * gnu/packages/telegram.scm, * gnu/packages/vulkan.scm, * gnu/packages/web-browsers.scm, * gnu/packages/web.scm, * gnu/packages/webkit.scm: Remove some unecessary module imports. Efraim Flashner 2023-01-30gnu: texlive-graphics: Use over deprecated texlive-latex-graphics....* gnu/packages/bioinformatics.scm (phyml)[native-inputs], * gnu/packages/chemistry.scm (yaehmop)[native-inputs], * gnu/packages/graphviz.scm (dot2tex)[propagated-inputs], * gnu/packages/maths.scm (cddlib)[native-inputs], * gnu/packages/statistics.scm (r-with-tests)[native-inputs], * gnu/packages/tex.scm (texlive-apa6)[propagated-inputs]: Replace texlive-latex-graphics with texlive-graphics. Efraim Flashner 2023-01-12gnu: gromacs: Mark as tunable....* gnu/packages/chemistry.scm (gromacs)[properties]: New field. Ludovic Courtès 2023-01-10gnu: gromacs: Remove input labels and use gexps....* gnu/packages/chemistry.scm (gromacs)[arguments]: Turn into gexps. [native-inputs]: Remove labels. Remove (package-source googletest). Ludovic Courtès 2023-01-10gnu: gromacs: Update to 2022.4....* gnu/packages/chemistry.scm (gromacs): Update to 2022.4. * gnu/packages/patches/gromacs-tinyxml2.patch: Adjust accordingly. Ludovic Courtès 2022-10-27gnu: python-setuptools: Move to python-build....* gnu/packages/python-xyz.scm (python-setuptools): Move… * gnu/packages/python-build.scm: …here. * gnu/packages/chemistry.scm, gnu/packages/messaging.scm, gnu/packages/sequoia.scm, tests/lint.scm: Adjust module imports accordingly. Co-authored-by: Marius Bakke <marius@gnu.org> Lars-Dominik Braun 2022-10-15gnu: Add rdkit....* gnu/packages/chemistry.scm (rdkit): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> David Elsing 2022-10-15gnu: Add ringdecomposerlib....* gnu/packages/chemistry.scm (ringdecomposerlib): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> David Elsing 2022-10-15gnu: Add avalon-toolkit....* gnu/packages/chemistry.scm (avalon-toolkit): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> David Elsing 2022-10-15gnu: Add yaehmop....* gnu/packages/chemistry.scm (yaehmop): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> David Elsing 2022-10-15gnu: Add coordgenlibs....* gnu/packages/chemistry.scm (coordgenlibs): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> David Elsing 2022-10-15gnu: Add maeparser....* gnu/packages/chemistry.scm (maeparser): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> David Elsing 2022-10-15gnu: Add freesasa....* gnu/packages/chemistry.scm (freesasa): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> David Elsing 2022-10-15gnu: Add gemmi....* gnu/packages/patches/gemmi-fix-pegtl-usage.patch: New file. * gnu/packages/patches/gemmi-fix-sajson-types.patch: New file. * gnu/local.mk (dist_patch_DATA): Register them here. * gnu/packages/chemistry.scm (gemmi): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> David Elsing 2022-10-15gnu: Add sajson-for-gemmi....* gnu/packages/cpp.scm (sajson-for-gemmi): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> David Elsing