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;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2021 Ricardo Wurmus <rekado@elephly.net>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.

(define-module (gnu packages perl-maths)
  #:use-module ((guix licenses) #:prefix license:)
  #:use-module (guix packages)
  #:use-module (guix download)
  #:use-module (guix build-system perl)
  #:use-module (gnu packages)
  #:use-module (gnu packages gcc)
  #:use-module (gnu packages gd)
  #:use-module (gnu packages gl)
  #:use-module (gnu packages maths)
  #:use-module (gnu packages perl)
  #:use-module (gnu packages perl-check))

(define-public perl-math-cephes
  (package
    (name "perl-math-cephes")
    (version "0.5305")
    (source (origin
              (method url-fetch)
              (uri (string-append
                    "mirror://cpan/authors/id/S/SH/SHLOMIF/Math-Cephes-"
                    version ".tar.gz"))
              (sha256
               (base32
                "18c3xg53d1vv7hlj43601jj7ks119fm6ndpwpv94irr2905806jn"))
              ;; For reproducibility
              (modules '((guix build utils)))
              (snippet
               '(substitute* "libmd/Makefile.PL"
                  (("readdir DIR") "sort readdir DIR")))))
    (build-system perl-build-system)
    (home-page "https://metacpan.org/release/Math-Cephes")
    (synopsis "Perl interface to the Cephes math library")
    (description "The Math::Cephes module provides a Perl interface to over
150 functions of the Cephes math library.")
    (license license:perl-license)))

(define-public perl-math-matrixreal
  (package
    (name "perl-math-matrixreal")
    (version "2.13")
    (source (origin
              (method url-fetch)
              (uri (string-append
                    "mirror://cpan/authors/id/L/LE/LETO/Math-MatrixReal-"
                    version ".tar.gz"))
              (sha256
               (base32
                "1cml5wqd99hm398gl8f147ccsck9v179l7a6vqjj4kfkdnja37sg"))))
    (build-system perl-build-system)
    (native-inputs
     (list perl-module-build perl-test-most))
    (home-page "https://metacpan.org/release/Math-MatrixReal")
    (synopsis "Manipulate NxN matrices of real numbers")
    (description "This package provides the @code{Math::MatrixReal} module.
It implements the data type \"matrix of real numbers\" (and consequently also
\"vector of real numbers\").")
    (license license:perl-license)))

;; This is NOT compatible with perl-pdl-2.095
(define-public perl-pdl-2.019
  (package
    (name "perl-pdl")
    (version "2.019")
    (source
     (origin
       (method url-fetch)
       (uri (string-append "https://www.cpan.org/modules/by-module/PDL/PDL-" version
                           ".tar.gz"))
       (sha256
        (base32 "1zkp5pm351qjr6sb3xivpxy5vjfl72ns0hb4dx5vpm8xvgp7p92i"))
       (patches
        (search-patches "pdl-2.019-glut-bitmap-fonts.patch"))))
    (build-system perl-build-system)
    (arguments
     `(#:phases
       (modify-phases %standard-phases
         (add-after 'unpack 'patch-includes
           (lambda* (#:key inputs #:allow-other-keys)
             (substitute* "perldl.conf"
              (("WITH_BADVAL => 0") "WITH_BADVAL => 1")
              (("WITH_GD => undef") "WITH_GD => true")
              (("GD_INC => undef")
               (string-append "GD_INC => '" (assoc-ref inputs "gd") "/include'"))
              (("GD_LIB => undef")
               (string-append "GD_LIB => '" (assoc-ref inputs "gd") "/lib'"))
              (("WITH_GSL => undef") "WITH_GSL => true"))))
         (add-before 'check 'prepare-check
           (lambda _
             ;; Set this for official CPAN releases of PDL.
             (setenv "SKIP_KNOWN_PROBLEMS" "1")
             (setenv "HOME" "/tmp"))))))
    (inputs (list gd gsl mesa glu))
    (native-inputs (list perl-devel-checklib
                         perl-extutils-depends
                         perl-extutils-f77
                         gfortran
                         perl-file-which
                         perl-pod-parser
                         perl-test-deep
                         perl-test-exception
                         perl-test-warn))
    (propagated-inputs (list perl-file-map
                             perl-file-which
                             perl-inline
                             perl-inline-c
                             perl-list-moreutils
                             perl-opengl
                             perl-pgplot
                             perl-pod-parser
                             perl-sys-sigaction
                             perl-termreadkey))
    (home-page "https://metacpan.org/release/PDL")
    (synopsis "Perl Data Language")
    (description "This package provides a library and simple REPL for the
Perl Data Language.")
    (license license:perl-license)))
ges/fpga.scm (icestorm, gtkwave, gtkwave) (python-myhdl)[home-page]: Likewise. * gnu/packages/freedesktop.scm (libatasmart)[home-page]: Likewise. * gnu/packages/ftp.scm (weex)[home-page]: Likewise. * gnu/packages/game-development.scm (dds, python-tmx, sfxr, quesoglc) (eureka, plib)[home-page]: Likewise. * gnu/packages/games.scm (abe, alex4, armagetronad, barony) (foobillard++, golly, ltris, pipewalker, prboom-plus, trigger-rally) (cmatrix, pinball, pioneers, tennix, chromium-bsu, freeciv, kiki) (quakespasm, frotz, frotz-dumb-terminal, frotz-sdl, btanks) (flare-engine, chessx, barrage, cgoban, passage)[home-page]: Likewise. * gnu/packages/geo.scm (python-geopandas, saga)[home-page]: Likewise. * gnu/packages/gl.scm (freeglut, gl2ps)[home-page]: Likewise. * gnu/packages/gnome.scm (cogl, clutter-gtk, clutter-gst, bluefish) (workrave)[home-page]: Likewise. * gnu/packages/gnustep.scm (wmnd, wmfire, wmfire)[home-page]: Likewise. * gnu/packages/graph.scm (mscgen)[home-page]: Likewise. * gnu/packages/graphics.scm (assimp, alembic, ctl, agg) (opencsg)[home-page]: Likewise. * gnu/packages/graphviz.scm (gts)[home-page]: Likewise. * gnu/packages/gtk.scm (gtkspell3)[home-page]: Likewise. * gnu/packages/guile-xyz.scm (guile-irregex)[home-page]: Likewise. * gnu/packages/haskell-apps.scm (cpphs)[home-page]: Likewise. * gnu/packages/haskell-check.scm (ghc-hunit)[home-page]: Likewise. * gnu/packages/haskell-web.scm (ghc-http-client-restricted) (ghc-blaze-html, ghc-happstack-server, ghc-sourcemap)[home-page]: Likewise. * gnu/packages/haskell-xyz.scm (ghc-assoc, ghc-cairo, ghc-cborg) (ghc-csv, ghc-glob, ghc-gtk2hs-buildtools, ghc-hmatrix-gsl-stats) (ghc-intervalmap, ghc-lens-family-core, ghc-managed, ghc-mountpoints) (ghc-network-multicast, ghc-optional-args, ghc-regex, ghc-spoon) (ghc-transformers, ghc-turtle, ghc-utf8-light, ghc-wizards) (ghc-template-haskell, ghc-boot-th, ghc-binary-orphans) (ghc-postgresql-simple)[home-page]: Likewise. * gnu/packages/hexedit.scm (ht, bvi)[home-page]: Likewise. * gnu/packages/hunspell.scm (hunspell-dict-hu)[home-page]: Likewise. * gnu/packages/image-processing.scm (mia)[home-page]: Likewise. * gnu/packages/image-viewers.scm (geeqie, gpicview, luminance-hdr) (qiv)[home-page]: Likewise. * gnu/packages/image.scm (libuemf, devil, steghide, optipng, niftilib) (sng, mtpaint)[home-page]: Likewise. * gnu/packages/java-xml.scm (java-simple-xml, java-jaxp) (java-apache-xml-commons-resolver)[home-page]: Likewise. * gnu/packages/java.scm (java-cisd-base, java-cisd-args4j) (java-hamcrest-core, java-jsr305, java-eclipse-osgi) (java-eclipse-equinox-common, java-eclipse-core-jobs) (java-eclipse-equinox-registry, java-eclipse-equinox-app) (java-eclipse-equinox-preferences, java-eclipse-core-contenttype) (java-eclipse-text, java-treelayout, java-aopalliance, java-jeromq) (java-cdi-api)[home-page]: Likewise. * gnu/packages/jemalloc.scm (jemalloc-4.5.0)[home-page]: Likewise. * gnu/packages/julia-xyz.scm (julia-recipespipeline)[home-page]: Likewise. * gnu/packages/kde-internet.scm (kget)[home-page]: Likewise. * gnu/packages/kde-systemtools.scm (dolphin-plugins) (konsole)[home-page]: Likewise. * gnu/packages/kodi.scm (fstrcmp)[home-page]: Likewise. * gnu/packages/language.scm (hime, libchewing)[home-page]: Likewise. * gnu/packages/lego.scm (nqc)[home-page]: Likewise. * gnu/packages/lesstif.scm (lesstif)[home-page]: Likewise. * gnu/packages/libcanberra.scm (libcanberra)[home-page]: Likewise. * gnu/packages/libdaemon.scm (libdaemon)[home-page]: Likewise. * gnu/packages/libffi.scm (libffi)[home-page]: Likewise. * gnu/packages/libreoffice.scm (libwpd, libwpg, libwps)[home-page]: Likewise. * gnu/packages/libusb.scm (libmtp, gmtp)[home-page]: Likewise. * gnu/packages/linux.scm (e2fsprogs, extundelete, lsscsi, net-tools) (kbd, sysfsutils, cpuid, libpfm4)[home-page]: Likewise. * gnu/packages/lisp-check.scm (sbcl-ptester, sbcl-xlunit)[home-page]: Likewise. * gnu/packages/lisp-xyz.scm (sbcl-html-encode, sbcl-py-configparser) (sbcl-cl-utilities, sbcl-series, sbcl-uffi, sbcl-clsql, sbcl-sycamore) (sbcl-osicat, sbcl-hu.dwim.common, sbcl-caveman, sbcl-trivial-shell) (sbcl-trivial-benchmark, sbcl-screamer, sbcl-smug)[home-page]: Likewise. * gnu/packages/lisp.scm (lush2)[home-page]: Likewise. * gnu/packages/logging.scm (log4cpp)[home-page]: Likewise. * gnu/packages/lua.scm (lua-ldoc)[home-page]: Likewise. * gnu/packages/machine-learning.scm (mcl, openfst, rxcpp)[home-page]: Likewise. * gnu/packages/mail.scm (muchsync, procmail, sendmail) (opensmtpd-filter-dkimsign, crm114)[home-page]: Likewise. * gnu/packages/man.scm (libpipeline, man-db)[home-page]: Likewise. * gnu/packages/maths.scm (lapack, scalapack, hdf-eos5, itpp, gmsh) (metamath, p4est, armadillo, suitesparse, atlas, lpsolve, wcalc, why3) (frama-c)[home-page]: Likewise. * gnu/packages/mcrypt.scm (mcrypt, libmcrypt, libmhash)[home-page]: Likewise. * gnu/packages/minetest.scm (minetest-advtrains)[home-page]: Likewise. * gnu/packages/monitoring.scm (python-whisper, python-carbon) (hostscope)[home-page]: Likewise. * gnu/packages/mp3.scm (id3lib, libmp3splt, mp3splt, mpg321) (lame)[home-page]: Likewise. * gnu/packages/multiprecision.scm (mpc)[home-page]: Likewise. * gnu/packages/music.scm (aria-maestosa, lingot, setbfree, bristol) (portmidi, python-pyportmidi, zynaddsubfx, yoshimi, aj-snapshot) (schismtracker, midicsv, midicsv, qmidiarp, qmidiroute, dssi, tap-lv2) (shiru-lv2)[home-page]: Likewise. * gnu/packages/ncurses.scm (stfl)[home-page]: Likewise. * gnu/packages/networking.scm (lksctp-tools, mbuffer, ifstatus, bird) (tunctl, traceroute)[home-page]: Likewise. * gnu/packages/node-xyz.scm (node-mersenne)[home-page]: Likewise. * gnu/packages/ntp.scm (openntpd)[home-page]: Likewise. * gnu/packages/ocaml.scm (opam, hevea, ocaml-menhir, ocaml-piqilib) (ocaml-graph, cubicle)[home-page]: Likewise. * gnu/packages/opencl.scm (python-pyopencl)[home-page]: Likewise. * gnu/packages/package-management.scm (xstow, modules)[home-page]: Likewise. * gnu/packages/parallel.scm (xjobs)[home-page]: Likewise. * gnu/packages/pdf.scm (podofo, qpdf, xournal, impressive)[home-page]: Likewise. * gnu/packages/perl.scm (perl-math-vecstat, perltidy)[home-page]: Likewise. * gnu/packages/photo.scm (libpano13, enblend-enfuse, hugin)[home-page]: Likewise. * gnu/packages/plan9.scm (drawterm)[home-page]: Likewise. * gnu/packages/plotutils.scm (guile-charting, ploticus)[home-page]: Likewise. * gnu/packages/popt.scm (argtable, popt)[home-page]: Likewise. * gnu/packages/profiling.scm (otf2)[home-page]: Likewise. * gnu/packages/pulseaudio.scm (pulseaudio)[home-page]: Likewise. * gnu/packages/python-check.scm (python-mypy)[home-page]: Likewise. * gnu/packages/python-web.scm (python-cssutils) (python-translationstring)[home-page]: Likewise. * gnu/packages/python-xyz.scm (python-diskcache, python-doxyqml) (python-docutils, python-pexpect, python-importlib-resources) (python-simplegeneric, python-urwid, python-xlrd, python-xlwt) (python-pyasn1, python-pythondialog, python-tftpy, python-random2) (python-arcp, python-pyopengl, python-sortedcollections) (python-sortedcontainers, python-yapsy, python-pydispatcher) (python-posix-ipc)[home-page]: Likewise. * gnu/packages/qt.scm (qwt, libqglviewer, signond)[home-page]: Likewise. * gnu/packages/radio.scm (unixcw, gnuais)[home-page]: Likewise. * gnu/packages/raspberry-pi.scm (bcm2835)[home-page]: Likewise. * gnu/packages/rdf.scm (clucene, rasqal, redland)[home-page]: Likewise. * gnu/packages/regex.scm (tre)[home-page]: Likewise. * gnu/packages/rsync.scm (librsync)[home-page]: Likewise. * gnu/packages/ruby.scm (ruby-packnga, ruby-nokogiri, ruby-oj, ruby-ox) (ruby-sinatra, ruby-citrus, ruby-cbor, ruby-roda)[home-page]: Likewise. * gnu/packages/scheme.scm (scheme48, tinyscheme)[home-page]: Likewise. * gnu/packages/screen.scm (dtach)[home-page]: Likewise. * gnu/packages/scsi.scm (sg3-utils)[home-page]: Likewise. * gnu/packages/sdl.scm (libmikmod, sdl-pango)[home-page]: Likewise. * gnu/packages/shellutils.scm (hstr, rig)[home-page]: Likewise. * gnu/packages/simulation.scm (python-dolfin-adjoint)[home-page]: Likewise. * gnu/packages/smalltalk.scm (smalltalk)[home-page]: Likewise. * gnu/packages/speech.scm (espeak)[home-page]: Likewise. * gnu/packages/stalonetray.scm (stalonetray)[home-page]: Likewise. * gnu/packages/statistics.scm (jags, r-mass, r-class, r-lattice) (r-matrix, r-nnet, r-spatial, r-bit, r-bit64, r-digest, r-xtable) (python-statsmodels, r-ade4, r-latticeextra, r-rcurl, r-xml, r-mvtnorm) (r-robustbase, r-minqa, r-fdrtool, java-jdistlib, xlispstat)[home-page]: Likewise. * gnu/packages/swig.scm (swig)[home-page]: Likewise. * gnu/packages/task-management.scm (wtime)[home-page]: Likewise. * gnu/packages/tcl.scm (itcl, tclxml, tclx)[home-page]: Likewise. * gnu/packages/terminals.scm (libtermkey, mlterm, libvterm) (libvterm)[home-page]: Likewise. * gnu/packages/tex.scm (texlive-lm, texlive-lm-math, texlive-cs) (texlive-csplain, biber, texmaker)[home-page]: Likewise. * gnu/packages/text-editors.scm (joe)[home-page]: Likewise. * gnu/packages/textutils.scm (drm-tools, docx2txt)[home-page]: Likewise. * gnu/packages/tv.scm (tvtime)[home-page]: Likewise. * gnu/packages/unicode.scm (libunibreak)[home-page]: Likewise. * gnu/packages/upnp.scm (libupnp)[home-page]: Likewise. * gnu/packages/version-control.scm (cvs)[home-page]: Likewise. * gnu/packages/video.scm (transcode, libquicktime, mjpegtools, aalib) (liba52, libmpeg2, x265, libdv, dvdauthor, aegisub, pitivi, gavl) (dvdbackup, guvcview, video-contact-sheet)[home-page]: Likewise. * gnu/packages/virtualization.scm (bochs)[home-page]: Likewise. * gnu/packages/w3m.scm (w3m)[home-page]: Likewise. * gnu/packages/web.scm (qjson, libquvi-scripts, libquvi, quvi) (tidy-html, htmlcxx)[home-page]: Likewise. * gnu/packages/wm.scm (evilwm, menumaker)[home-page]: Likewise. * gnu/packages/wv.scm (wv)[home-page]: Likewise. * gnu/packages/wxwidgets.scm (wxsvg)[home-page]: Likewise. * gnu/packages/xdisorg.scm (mtdev, xsel)[home-page]: Likewise. * gnu/packages/xfig.scm (xfig, transfig)[home-page]: Likewise. * gnu/packages/xml.scm (openjade, python-pyxb, xmlstarlet, xmlrpc-c) (opensp)[home-page]: Likewise. * gnu/packages/xorg.scm (xf86-video-qxl)[home-page]: Likewise. Tobias Geerinckx-Rice 2023-02-17gnu: Make nothing depend on QtWebKit....This is required for <https://issues.guix.gnu.org/53289>. * gnu/packages/qt.scm (python-pyqt)[inputs]: Remove qtwebkit. (python-pyqt-without-qtwebkit): Remove variable. (python-pyqtwebengine)[inputs]: Replace python-pyqt-without-qtwebkit with python-pyqt. * gnu/packages/backup.scm (vorta)[inputs]: Likewise. * gnu/packages/ebook.scm (calibre)[inputs]: Likewise. [arguments]: Adjust accordingly. * gnu/packages/education.scm (anki)[inputs]: Replace python-pyqt-without-qtwebkit with python-pyqt. * gnu/packages/kde-games.scm (kajongg)[inputs]: Likewise. * gnu/packages/maths.scm (veusz)[inputs]: Likewise. * gnu/packages/music.scm (frescobaldi)[inputs]: Likewise. (picard)[inputs]: Likewise. * gnu/packages/orange.scm (orange)[inputs]: Likewise. * gnu/packages/pdf.scm (flyer-composer)[inputs]: Likewise. * gnu/packages/python-check.scm (python-pytest-qt)[propagated-inputs]: Likewise. * gnu/packages/python-xyz.scm (python-qtconsole)[propagated-inputs]: Likewise. (python-pyqtgraph)[propagated-inputs]: Likewise. * gnu/packages/radio.scm (gnuradio)[inputs]: Likewise. * gnu/packages/video.scm (openshot)[inputs]: Likewise. * gnu/packages/vpn.scm (openconnect-sso)[inputs]: Likewise. * gnu/packages/web-browsers.scm (qutebrowser)[inputs]: Likewise. Leo Famulari 2023-01-04gnu: hunspell: Move hunspell and dictionaries to hunspell module....Consolidate hunspell and its dictionaries into the (gnu packages hunspell) module instead of having them scattered about. * gnu/packages/aspell.scm (aspell-word-list, define-word-list-dictionary, hunspell-dict-{en, en-au, en-gb, en-gb-ize, en-us}): Remove variables. * gnu/packages/libreoffice.scm (hunspell, dicollecte-french-dictionary, define-french-dictionary, hunspell-dict-fr-{classique, moderne, réforme, toutes-variantes}, hunspell-dict-pl, hunspell-dict-de, hunspell-dict-hu): Remove variables. * gnu/packages/hunspell.scm (hunspell, dicollecte-french-dictionary, define-french-dictionary, hunspell-dict-fr-{classique, moderne, réforme, toutes-variantes}, hunspell-dict-pl, hunspell-dict-de, hunspell-dict-hu, aspell-word-list, define-word-list-dictionary, hunspell-dict-{en, en-au, en-gb, en-gb-ize, en-us}): Add variables. (hunspell-dictionary): Explicitly declare upstream libreoffice version to prevent circular dependency. * gnu/packages/ebook.scm, gnu/packages/enchant.scm, gnu/packages/freedesktop.scm, gnu/packages/gnuzilla.scm, gnu/packages/kde-frameworks.scm, gnu/packages/messaging.scm, gnu/packages/scribus.scm, gnu/packages/task-management.scm, gnu/packages/telegram.scm, gnu/packages/tex.scm, gnu/packages/text-editors.scm, gnu/packages/video.scm: Adjust module imports. Brian Cully 2022-11-28gnu: calibre: Add missing python-pycryptodome dependency....* gnu/packages/ebook.scm (calibre)[inputs]: Add missing python-pycryptodome dependency. Andrew Tropin 2022-11-20gnu: inkbox: Fix build....* gnu/packages/ebook.scm (inkbox)[arguments]: Use G-expression. Marius Bakke 2022-11-20gnu: inkbox: Update home-page and source URI....* gnu/packages/ebook.scm (inkbox)[home-page]: Set to repository, as the previous was NXDOMAIN. [source](uri): Use HOME-PAGE. Marius Bakke 2022-09-16gnu: Add shirah....* gnu/packages/ebook.scm (shirah): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net> M 2022-09-16gnu: Add python-ebooklib....* gnu/packages/ebook.scm (python-ebooklib): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net> M