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;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2021 Ricardo Wurmus <rekado@elephly.net>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.

(define-module (gnu packages perl-maths)
  #:use-module ((guix licenses) #:prefix license:)
  #:use-module (guix packages)
  #:use-module (guix download)
  #:use-module (guix build-system perl)
  #:use-module (gnu packages)
  #:use-module (gnu packages gcc)
  #:use-module (gnu packages gd)
  #:use-module (gnu packages gl)
  #:use-module (gnu packages maths)
  #:use-module (gnu packages perl)
  #:use-module (gnu packages perl-check))

(define-public perl-math-cephes
  (package
    (name "perl-math-cephes")
    (version "0.5305")
    (source (origin
              (method url-fetch)
              (uri (string-append
                    "mirror://cpan/authors/id/S/SH/SHLOMIF/Math-Cephes-"
                    version ".tar.gz"))
              (sha256
               (base32
                "18c3xg53d1vv7hlj43601jj7ks119fm6ndpwpv94irr2905806jn"))
              ;; For reproducibility
              (modules '((guix build utils)))
              (snippet
               '(substitute* "libmd/Makefile.PL"
                  (("readdir DIR") "sort readdir DIR")))))
    (build-system perl-build-system)
    (home-page "https://metacpan.org/release/Math-Cephes")
    (synopsis "Perl interface to the Cephes math library")
    (description "The Math::Cephes module provides a Perl interface to over
150 functions of the Cephes math library.")
    (license license:perl-license)))

(define-public perl-math-matrixreal
  (package
    (name "perl-math-matrixreal")
    (version "2.13")
    (source (origin
              (method url-fetch)
              (uri (string-append
                    "mirror://cpan/authors/id/L/LE/LETO/Math-MatrixReal-"
                    version ".tar.gz"))
              (sha256
               (base32
                "1cml5wqd99hm398gl8f147ccsck9v179l7a6vqjj4kfkdnja37sg"))))
    (build-system perl-build-system)
    (native-inputs
     (list perl-module-build perl-test-most))
    (home-page "https://metacpan.org/release/Math-MatrixReal")
    (synopsis "Manipulate NxN matrices of real numbers")
    (description "This package provides the @code{Math::MatrixReal} module.
It implements the data type \"matrix of real numbers\" (and consequently also
\"vector of real numbers\").")
    (license license:perl-license)))

;; This is NOT compatible with perl-pdl-2.095
(define-public perl-pdl-2.019
  (package
    (name "perl-pdl")
    (version "2.019")
    (source
     (origin
       (method url-fetch)
       (uri (string-append "https://www.cpan.org/modules/by-module/PDL/PDL-" version
                           ".tar.gz"))
       (sha256
        (base32 "1zkp5pm351qjr6sb3xivpxy5vjfl72ns0hb4dx5vpm8xvgp7p92i"))
       (patches
        (search-patches "pdl-2.019-glut-bitmap-fonts.patch"))))
    (build-system perl-build-system)
    (arguments
     `(#:phases
       (modify-phases %standard-phases
         (add-after 'unpack 'patch-includes
           (lambda* (#:key inputs #:allow-other-keys)
             (substitute* "perldl.conf"
              (("WITH_BADVAL => 0") "WITH_BADVAL => 1")
              (("WITH_GD => undef") "WITH_GD => true")
              (("GD_INC => undef")
               (string-append "GD_INC => '" (assoc-ref inputs "gd") "/include'"))
              (("GD_LIB => undef")
               (string-append "GD_LIB => '" (assoc-ref inputs "gd") "/lib'"))
              (("WITH_GSL => undef") "WITH_GSL => true"))))
         (add-before 'check 'prepare-check
           (lambda _
             ;; Set this for official CPAN releases of PDL.
             (setenv "SKIP_KNOWN_PROBLEMS" "1")
             (setenv "HOME" "/tmp"))))))
    (inputs (list gd gsl mesa glu))
    (native-inputs (list perl-devel-checklib
                         perl-extutils-depends
                         perl-extutils-f77
                         gfortran
                         perl-file-which
                         perl-pod-parser
                         perl-test-deep
                         perl-test-exception
                         perl-test-warn))
    (propagated-inputs (list perl-file-map
                             perl-file-which
                             perl-inline
                             perl-inline-c
                             perl-list-moreutils
                             perl-opengl
                             perl-pgplot
                             perl-pod-parser
                             perl-sys-sigaction
                             perl-termreadkey))
    (home-page "https://metacpan.org/release/PDL")
    (synopsis "Perl Data Language")
    (description "This package provides a library and simple REPL for the
Perl Data Language.")
    (license license:perl-license)))
='msg-tooltip'>* gnu/tests/install.scm (%btrfs-raid10-root-os) (%btrfs-raid10-root-os): New variables. (%btrfs-raid10-root-installation-script): Likewise. (%test-btrfs-raid10-root-images): Likewise. (%test-btrfs-raid10-root-os, %test-btrfs-raid10-root-os-degraded): New tests. Maxim Cournoyer 2022-03-19tests: install: Enable the use of multiple disk devices for tests....* gnu/tests/install.scm (run-install)[packages]: Unconditionally add to OS. [NUMBER-OF-DISKS]: Add argument, update doc and adjust. The returned gexp output is now a list of images rather than the image itself. * gnu/tests/install.scm (qemu-command*): Rename IMAGE argument to IMAGES, to account for the above change. Adjust doc. Generate a QEMU '-drive' argument for each disk image. (%test-installed-os): Rename the IMAGE variable to IMAGES. (%test-installed-extlinux-os): Likewise. (%test-iso-image-installer): Likewise. (%test-separate-home-os): Likewise. (%test-separate-store-os): Likewise. (%test-raid-root-os): Likewise. (%test-encrypted-root-os): Likewise. (%test-lvm-separate-home-os): Likewise. (%test-encrypted-root-not-boot-os): Likewise. (%test-btrfs-root-os): Likewise. (%test-btrfs-raid-root-os): Likewise. (%test-btrfs-root-on-subvolume-os): Likewise. (%test-jfs-root-os): Likewise. (%test-f2fs-root-os): Likewise. (%test-xfs-root-os): Likewise. (guided-installation-test): Likewise. Maxim Cournoyer 2022-03-19tests: install: Streamline 'qemu-command/writable-image'....* gnu/tests/install.scm (qemu-command/writable-image): Replace the use of a writable backing file by the use of the '-snapshot' option, and rename to... (qemu-command*): ... this, adjusting all calls. Maxim Cournoyer 2021-12-28installer: Recommend 'ntp-service-type' for non-graphical systems....We had several bug reports with a root cause of "the clock was incorrect" from users who used the installer to install a non-graphical Guix System. * gnu/installer/services.scm (%system-services): Add the ntp-service-type. * gnu/installer/newt/services.scm (run-system-administration-cbt-page): New variable. (run-services-page): Use run-system-administration-cbt-page when not installing a desktop. * gnu/installer/tests.scm (choose-services): Add and use a choose-misc-service? procedure. * gnu/tests/install.scm (installation-target-os-for-gui-tests)<services>: Add ntp-service-type. Leo Famulari 2021-12-23Remove VM generation dead-code....This code duplicates the (gnu system image) and (gnu build image) code. Using VM for image generation is not needed, not portable and really slow. Remove all the VM image generation code to make sure that only the image API is used. * gnu/build/vm.scm: Remove it. Move the qemu-command procedure to ... * gnu/build/marionette.scm: ... here. * gnu/local.mk (GNU_SYSTEM_MODULES): Adapt it. * tests/modules.scm: Ditto. * gnu/tests/install.scm: Ditto. * gnu/system/vm.scm: Adapt it and remove expression->derivation-in-linux-vm, qemu-img, system-qemu-image/shared-store and system-docker-image procedures. * doc/guix.texi (G-Expressions): Adapt it. Mathieu Othacehe 2021-12-01tests: install: Use the swap-space record....This fixes the following error: In gnu/services/base.scm: 2228:56 4 (_ #<<uuid> type: dce bv: #vu8(17 17 17 17 34 34 51 51 …>) In gnu/build/file-systems.scm: 239:13 3 (swap-space->flags-bit-mask #<<uuid> type: dce bv: #vu8…>) In ice-9/boot-9.scm: 1685:16 2 (raise-exception _ #:continuable? _) 1685:16 1 (raise-exception _ #:continuable? _) 1685:16 0 (raise-exception _ #:continuable? _) ice-9/boot-9.scm:1685:16: In procedure raise-exception: In procedure swap-space-priority: Wrong type argument: #<<uuid> type: dce bv: #vu8(17 17 17 17 34 34 51 51 68 68 18 52 86 120 154 188)> * gnu/tests/install.scm (installation-target-os-for-gui-tests): Use the swap-space record. Mathieu Othacehe 2021-11-23tests: Fix installation tests....Use a CEST timezone as this is the assumed timezone in the run-basic-test procedure. * gnu/tests/install.scm (%encrypted-root-not-boot-os, %btrfs-root-on-subvolume-os): Use a CEST timezone. Mathieu Othacehe 2021-10-18tests: Pass '-F qcow2' to 'qemu-img create'....Fixes a regression introduced in 0b5e128750ed40d4348f2eb49d328b81dba9181a, whereby 'qemu-img create ...' as used here would fail with: qemu-img: disk.img: Backing file specified without backing format thereby breaking tests from (gnu tests install). * gnu/tests/install.scm (qemu-command/writable-image): Pass "-F qcow2". Ludovic Courtès 2021-09-23tests: install: Test an XFS root file system....* gnu/tests/install.scm (%xfs-root-os, %xfs-root-os-source) (%xfs-root-installation-script, %test-xfs-root-os): New variables. Tobias Geerinckx-Rice 2021-08-29Migrate to the new 'targets' field of bootloader-configuration....The old 'target' field is deprecated; adjust the sources to use the new 'targets' one instead. * doc/guix-cookbook.texi<target>: Replace by 'targets'. * gnu/bootloader/grub.scm: Likewise. * gnu/installer/parted.scm: Likewise. * gnu/machine/digital-ocean.scm: Likewise. * gnu/system/examples/asus-c201.tmpl: Likewise * gnu/system/examples/bare-bones.tmpl: Likewise * gnu/system/examples/bare-hurd.tmpl: Likewise * gnu/system/examples/beaglebone-black.tmpl: Likewise * gnu/system/examples/desktop.tmpl: Likewise * gnu/system/examples/docker-image.tmpl: Likewise * gnu/system/examples/lightweight-desktop.tmpl: Likewise * gnu/system/examples/vm-image.tmpl: Likewise * gnu/system/examples/yggdrasil.tmpl: Likewise * gnu/system/hurd.scm: Likewise * gnu/system/images/hurd.scm: Likewise * gnu/system/images/novena.scm: Likewise * gnu/system/images/pine64.scm: Likewise * gnu/system/images/pinebook-pro.scm: Likewise * gnu/system/images/rock64.scm: Likewise * gnu/system/install.scm: Likewise * gnu/system/vm.scm: Likewise * gnu/tests.scm: Likewise * gnu/tests/ganeti.scm: Likewise * gnu/tests/install.scm: Likewise * gnu/tests/nfs.scm: Likewise * gnu/tests/telephony.scm: Likewise * tests/boot-parameters.scm: Likewise * tests/system.scm: Likewise Maxim Cournoyer 2021-08-29gnu: bootloader: Support multiple targets....Fixes <https://issues.guix.gnu.org/40997>. * gnu/bootloader.scm (<bootloader-configuration>): New 'targets' field. (%bootloader-configuration-target): New procedure. (bootloader-configuration-target): Add deprecation warning. (bootloader-configuration-targets): New procedure. * guix/scripts/system.scm (install): Access targets via bootloader-configuration-targets. (perform-action)[bootloader-target]: Remove unused argument and update doc. Access targets via bootloader-configuration-targets and fix indentation. (process-action): Access targets via bootloader-configuration-targets. Do not provide the unused BOOTLOADER-TARGET argument when applying `perform-action'. * guix/scripts/system/reconfigure.scm (install-bootloader-program): Rename DEVICE argument to DEVICES. Adjust doc and comment. Apply `installer' and `disk-installer' for every DEVICES. (install-bootloader): Access targets via bootloader-configuration-targets and rename variable from DEVICE to DEVICES. * gnu/tests/install.scm: Adjust accordingly. * tests/guix-system.sh: Likewise. * gnu/tests/reconfigure.scm (run-install-bootloader-test): Adjust the DEVICES argument so that it is a list. * doc/guix.texi: Update doc. Maxim Cournoyer 2021-07-04installer: tests: Expect but do not select other services by default....* gnu/installer/tests.scm (choose-services): Accept a new choose-other-service? keyword argument, defaulting to false. Expect an "Other services" checkbox-list. Update docstring. Tobias Geerinckx-Rice 2021-04-28tests: Add gui-uefi-installed-os test....* gnu/installer/tests.scm (conclude-installation): Rename it into ... (start-installation): ... this new procedure. (complete-installation): New procedure. (choose-partitioning): Add an uefi-support? argument. * gnu/tests/install.scm (uefi-firmware): New procedure. (run-install, qemu-command/writable-image, gui-test-program, installation-target-os-for-gui-tests): Add an uefi-support? argument. (%extra-packages): Add grub-efi, fatfsck/static and dosfstools. (%test-gui-installed-os): New variable. Mathieu Othacehe 2021-01-27system: tests: Add a Btrfs RAID system test....* gnu/tests/install.scm (%btrfs-raid-root-os) (%btrfs-raid-root-os-source, %btrfs-raid-root-installation-script) (%test-btrfs-raid-root-os): New variables. Maxim Cournoyer 2021-01-20tests: install: Fix build....This is a follow-up of: 2f497d94e7f6574b0847025ce29eafaf858008ef. * gnu/tests/install.scm (run-install): Rename 'raw to 'efi-raw. Mathieu Othacehe 2020-12-21system: Allow separated /boot and encrypted root....* gnu/bootloader/grub.scm (grub-configuration-file): New parameter store-crypto-devices. [crypto-devices]: New helper function. [builder]: Use crypto-devices. * gnu/machine/ssh.scm (roll-back-managed-host): Use boot-parameters-store-crypto-devices to provide its contents to the bootloader configuration generation process. * gnu/tests/install.scm (%encrypted-root-not-boot-os, %encrypted-root-not-boot-os): New os declaration. (%encrypted-root-not-boot-installation-script): New script, whose contents were initially taken from %encrypted-root-installation-script. (%test-encrypted-root-not-boot-os): New test. * gnu/system.scm (define-module): Export operating-system-bootoader-crypto-devices and boot-parameters-store-crypto-devices. (<boot-parameters>): Add field store-crypto-devices. (read-boot-parameters): Parse store-crypto-devices field. [uuid-sexp->uuid]: New helper function extracted from device-sexp->device. (operating-system-bootloader-crypto-devices): New function. (operating-system-bootcfg): Use operating-system-bootloader-crypto-devices to provide its contents to the bootloader configuration generation process. (operating-system-boot-parameters): Add store-crypto-devices to the generated boot-parameters. (operating-system-boot-parameters-file): Likewise to the file with the serialized structure. * guix/scripts/system.scm (reinstall-bootloader): Use boot-parameters-store-crypto-devices to provide its contents to the bootloader configuration generation process. * tests/boot-parameters.scm (%default-store-crypto-devices): New variable. (%grub-boot-parameters, test-read-boot-parameters): Use %default-store-crypto-devices. (tests store-crypto-devices): New tests. Miguel Ángel Arruga Vivas